PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG035623t1
Common NameTCM_035623
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 310aa    MW: 33676.8 Da    PI: 8.9731
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG035623t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.11.1e-14227287362
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS
            bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklkse 62 
                       + +r+rr++kNRe+A rsR+RK+a++ eLe  + +Le+eN++L k+++e+ k+  ++l  +
  Thecc1EG035623t1 227 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENEQLlKEKAERTKERFKQLMEK 287
                       679**************************************97256788888888887655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.7E-12223285No hitNo description
SMARTSM003383.4E-10225289IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.864227279IPR004827Basic-leucine zipper domain
PfamPF001703.3E-13227287IPR004827Basic-leucine zipper domain
CDDcd147072.42E-17229275No hitNo description
SuperFamilySSF579593.16E-9229280No hitNo description
PROSITE patternPS000360232247IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MASSKVMPTS NSRNSDLSRR SASSSSSTKP QSFSDQSNIN NSNTNRLSST MTVDGILRNV  60
YSAAPTTETT LVDASITLID TPTPTTAGGN SEVSQGQTVA DCSNNVAKSV DEVWREIVSG  120
ERKEITMKEE APDEMMTLED FLAKAGAVED AAAAATAEVK VQQDRMSGGV YAYDPVGGSP  180
FQMLDKMEGS IVGLNGMEVI GSGGGAGGGG RGKRGRGVLM EPLDKAAQQR QRRMIKNRES  240
AARSRERKQA YQVELESLAV KLEEENEQLL KEKAERTKER FKQLMEKVVP VVEQRRPPRV  300
LRRVRSLQW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007019519.10.0Basic-leucine zipper transcription factor family protein, putative
SwissprotP427772e-66GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A061FQF90.0A0A061FQF9_THECC; Basic-leucine zipper transcription factor family protein, putative
STRINGVIT_18s0072g00470.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.12e-49bZIP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]